The video tutorial about MS-DIAL processing for Feature Based Molecular Networking.Please consult these resources for more details on MS-DIAL processing: The following documentation serves a basic guideline for using MS-DIAL with the Feature-Based Molecular Networking workflow.

IMPORTANT: MS-DIAL parameters will vary depending on the mass spectrometer, the acquisition parameters, and the sample studied. For conveniency we are also providing a batch file (XML format) that can be imported directly in MS-DIAL. Here we will present key steps required to process LC-MS/MS data acquired in non-targeted mode (data dependent acquisition). In MS-DIAL, a sequence of steps is performed to process the mass spectrometry data. Mass Spectrometry Data Processing with MS-DIAL Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. Lai, Z., Tsugawa, H., Wohlgemuth, G., Mehta, S., Mueller, M., Zheng, Y., Ogiwara, A., Meissen, J., Showalter, M., Takeuchi, K., Kind, T., Beal, P., Arita, M. MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. Tsugawa, H., Cajka, T., Kind, T., Ma, Y., Higgins, B., Ikeda, K., Kanazawa, M., VanderGheynst, J., Fiehn, O. This work builds on the efforts of our many colleagues, please cite their work: Mass spectrometry processing with MS-DIALĭownload the latest version of MS-DIAL software at. The main documentation for Feature-Based Molecular Networking can be accessed here:īelow we are describing how to use MS-DIAL with the FBMN workflow on GNPS.

The tools supported are: MZmine2, OpenMS, MS-DIAL, MetaboScape, XCMS, and Progenesis QI. The Feature-Based Molecular Networking (FBMN) is a computational method that bridges popular mass spectrometry data processing tools for LC-MS/MS and molecular networking analysis on GNPS. Molecular Networking - Analog Discovery in Microbial Extractsįeature Based Molecular Networking with MZmine2 - Microbiome Molecules in Fecal Samples in American Gut Projectįeature Based Molecular Networking with MSDial - Microbiome Molecules in Fecal Samples in American Gut Projectįeature Based Molecular Networking with Metaboscape - Coffee Analysisįeature Based Molecular Networking analysis at GNPS Reference Spectral Library Batch Addition MS2LDA and MotifDB Substructure Discovery Mass Spectrometry Data Processing with MS-DIALĬonvert your LC-MS/MS Data to Open FormatĮxport or/and submit the files needed for Feature-Based Molecular Networking on GNPS: Mass spectrometry processing with MS-DIAL

Cdf files mass spec